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Packed storage matrix

posted by admin in matrix, Packed storage matrix, Uncategorized

Packed storage matrix, also known as packed matrix, is a term used in programming for representing an <math>m\times n</math> matrix. It is a more compact way than an m-by-n rectangular array by exploiting a special structure of the matrix.

Typical examples of matrices that can take advantage of packed storage include:

symmetric or hermitian matrix
Triangular matrix
Banded matrix

These are most notably used in BLAS and LAPACK. Various storage schemes for sparse matrices can also be regarded as packed storage.

For a symmetric, hermitian or triangular matrix, only the lower or upper triangle of the matrix needs to be stored. A banded matrix can be represented by storing the band only. Packed storage saves memory at the cost of more complicated
access to matrix elements. Because of this tradeoff, it is not always beneficial.

Code examples (Fortran)

Both of the following storage schemes are used extensively in BLAS and LAPACK.

An example of packed storage for hermitian matrix:

complex:: A(n,n) ! a hermitian matrix
complex:: AP(n*(n+1)/2) ! packed storage for A
! the lower triangle of A is stored column-by-column in AP.
! unpacking the matrix AP to A
do j=1,n
  k = j*(j-1)/2
  A(1:j,j) = AP(1+k:j+k)
  A(j,1:j-1) = conjg(AP(1+k:j-1+k))
end do

An example of packed storage for banded matrix:

real:: A(m,n) ! a banded matrix with kl subdiagonals and ku superdiagonals
real:: AP(-kl:ku,n) ! packed storage for A
! the band of A is stored column-by-column in AP. Some elements of AP are unused.
! unpacking the matrix AP to A
do j=1,n
  forall(i=max(1,j-kl):min(m,j+ku)) A(i,j) = AP(i-j,j)
end do
print *,AP(0,:) ! the diagonal

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